Compilers are needed to turn your source code into executable files. We aim to provide as many compilers as possible for the supported platforms, in order to support as many user applications as possible. If want to compile your code from scratch, you can use one of these compilers and dependency libraries.
| Name |
Versions |
Status |
Repo |
Description |
Published |
| GMP |
6.1.0
|
|
|
GNU Multiprecision library
|
|
| MPFR |
3.1.2
3.1.5
|
|
|
GNU MPFR is a C library for multiple-precision floating-point computations with correct rounding.
|
|
| MPC |
1.0.1
1.0.3
|
|
|
Gnu MPC is a C library for the arithmetic of complex numbers with arbitrarily high precision and correct rounding of the result
|
|
| GCC |
4.9.4
5.4.0
6.3.0
|
|
|
The GNU Compiler Collection
|
|
| CMake |
3.4.0
|
|
|
Cross-platform build tools
|
|
| LLVM |
3.7.0
|
|
|
The LLVM Project is a collection of modular and reusable compiler and toolchain technologies.
|
|
These libraries are available for your application to link against on the worker nodes.
| Name |
Versions |
Status |
Repo |
Description |
Published |
| argtable |
2.13
|
|
|
No description
|
|
| OpenMPI |
1.10.2
1.8.8
1.8.1
|
|
|
Message Passing Interface
|
|
| MPICH |
3.2
|
|
|
Message Passing Interface
|
|
| zlib |
1.2.11
|
|
|
Free Compression Library
|
|
| bzip2 |
1.0.6
|
|
|
Free Compression Library
|
|
| libxml2 |
2.9.3
|
|
|
XML library
|
|
| openssl |
1.1.0c
1.0.2j
|
|
|
Open SSL cryptographic libraries and tools
|
|
| LUA |
5.3.2
|
|
|
A powerful, fast, lightweight, embeddable scripting language.
|
|
| ncurses |
6.0
|
|
|
The Ncurses library is a free software emulation of curses in System V Release 4.0, and more.
|
|
| readline |
6.3
7.0
|
|
|
A utility which aids in the consistency of user interface across discrete programs
|
|
| BOOST C++ |
1.62
|
|
|
Boost provides free peer-reviewed portable C++ source libraries.
|
|
| LAPACK |
3.6.0
3.7.0
|
|
|
Linear Algorithm packages for HPC
|
|
| ScaLAPACK |
2.0.2
|
|
|
Scalable, parallel Linear Algebra Libraries
|
|
| ATLAS |
3.10.2
|
|
|
Automatically-Tuned Linear Algebra Software
|
|
| GSL |
1.16
2.1
2.3
|
|
|
GNU Science Libraries
|
|
| HDF5 (with OpenMPI) |
1.8.15
1.8.16
|
|
|
HDF5 is a data model, library, and file format for storing and managing data.
|
|
| HDF5 (with MPICH) |
1.8.14
1.8.15
|
|
|
HDF5 is a data model, library, and file format for storing and managing data.
|
|
| NetCDF |
4.3.3
4.4.1
|
|
|
NetCDF (network Common Data Form) is a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.
|
|
| FFTW3 |
3.3.4
|
|
|
FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and of both real and complex data (as well as of even/odd data, i.e. the discrete cosine/sine transforms or DCT/DST).
|
|
| SparseHash |
2.0.3
|
|
|
Google's SparseHash library
|
|
| gnuplot |
4.6.7
5.0.3
5.0.5
5.0.6
|
|
|
GNU Plotting Library
|
|
| proj |
4.9.2
|
|
|
Cartographic Projections Library
|
|
| Java OpenJDK |
7u80
8u66
|
|
|
Java platform libraries and tools
|
|
| JasPer |
1.900.1
|
|
|
open-source initiative to provide a free software-based reference implementation of the codec specified in the JPEG-2000 Part-1 standard (i.e., ISO/IEC 15444-1).
|
|
| FreeType |
2.6.1
2.7.1
|
|
|
a free, high-quality and portable Font engine.
|
|
| Sqlite |
|
|
|
Cross-platform C library that implements a self-contained, embeddable, zero-configuration SQL database engine.
|
|
| SuiteSparse |
4.4.6
|
|
|
A suite of sparse matrix algorithms.
|
|
| Tcl/Tk |
8.6.6
|
|
|
scripting language
|
|
| MatPlotLib |
4.8.4
4.9.2
|
|
|
Plotting functions for python
|
|
| CLHEP |
2.3.1.1
2.3.2.2
|
|
|
Class Library for High-Energy Physics
|
|
Certain popular frameworks such as octave, R, ROOT are supported. Note that not all plugins or extensions of these are compiled in.
| Name |
Versions |
Status |
Repo |
Description |
Published |
| SymPy |
0.7.6.1
|
|
|
Symbolic Python
|
|
| ROOT |
v6.06.02
|
|
|
Object-Oriented Data Analysis Toolkit
|
|
| HEAsoft |
6.21
|
|
|
A Unified Release of the FTOOLS and XANADU Software Packages
|
|
These are python add-ons.
| Name |
Versions |
Status |
Repo |
Description |
Published |
| Python |
2.7.13
3.6.0
|
|
|
Python is a programming language that lets you work quickly and integrate systems more effectively.
|
|
| SciPy |
0.5.1
|
|
|
Scientific Python
|
|
| NumPy |
1.9.1
|
|
|
Numerical Python
|
|
| MatPlotLib |
4.8.4
4.9.2
|
|
|
Plotting functions for python
|
|
| Pandas |
0.20.2
|
|
|
pandas is an open source, BSD-licensed library providing high-performance, easy-to-use data structures and data analysis tools for the Python programming
|
|
| SymPy |
0.7.6.1
|
|
|
Symbolic Python
|
|
Applications for molecular dynamics or physical chemistry
| Name |
Versions |
Repo |
Description |
Published |
| Quantum Espresso |
5.1.3
|
|
|
Quantum ESPRESSO is an integrated suite of Open-Source computer codes for electronic-structure calculations and materials modeling at the nanoscale. It is based on density-functional theory, plane waves, and pseudopotentials.
|
|
| Abinit |
7.10.5
|
|
|
ABINIT is a package whose main program allows one to find the total energy, charge density and electronic structure of systems made of electrons and nuclei (molecules and periodic solids) within Density Functional Theory (DFT), using pseudopotentials and a planewave or wavelet basis.
|
|
| GROMACS |
5.1.1
|
|
|
A molecular dynamics package primarily designed for biomolecular systems such as proteins and lipids
|
|
| Motheur |
6.2
|
|
|
No description
|
|
Applications for the Human Language domain.
| Name |
Versions |
Repo |
Description |
Published |
| HTK |
3.4.1
3.5.beta-1
|
|
|
Hidden Markov Model Toolkit (HTK)
|
|
| LibSVM |
3.14
3.21
|
|
|
General purpose library for Support-Vector Machine learning.
|
|
This is what we've got in the pipeline
| Name |
Versions |
Repo |
Description |
Published |
| FastQC |
0.11.4
|
|
|
A quality control application for high throughput sequence data
|
|
| PRINSEQ |
0.20.4
|
Proposed
|
Proposed
|
PReprocessing and INformation of SEQuence data
|
|
| SolexaQA |
3.1.4
|
Proposed
|
|
SolexaQA calculates sequence quality statistics and creates visual representations of data quality for second-generation sequencing data
|
|
| Trimmomatic |
0.35
0.36
|
Proposed
|
Proposed
|
A flexible read trimming tool for Illumina NGS data
|
|
| Fluent |
No versions |
Proposed
|
Proposed
|
No description
|
|
| OpenFoam |
3.0.1
|
|
|
Computational Fluid Dynamics
|
|
| Dlpoly |
|
Proposed
|
Proposed
|
No description
|
|
| Cosmo MC / CAMB |
No versions |
Proposed
|
|
MCMC parameter sampling for cosmology
|
|
| WRF |
3.3
3.5
|
Proposed
|
Proposed
|
No description
|
|
| Ferret |
7.1.0
|
Proposed
|
Proposed
|
No description
|
|
| Amber |
12
|
Proposed
|
Proposed
|
No description
|
|
| Vasp |
5.2
|
Proposed
|
Proposed
|
No description
|
|
| Emboss |
6.5.7
|
Proposed
|
Proposed
|
No description
|
|
| Clustal Omega |
1.2.4
|
Proposed
|
Proposed
|
No description
|
|
| Plink |
|
|
|
PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale nalyses in a computationally efficient manner.
|
|
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